Module 7: Ecological Niche Modelling
Schedule
Day 1
Lectures
Practicals
Spatial subsampling
Read this first Analytical explanation.
Then work through the divvy vignette.
Filtering occurrences
Start with R script 1.
Then do R script 2.
R script 2 requires this environmental data.
Build your own climate model
Play around with building your own climate model.
Day 2
Lectures
Model Transfer & Extrapolation.
Practicals
SDM R Package vignette
Work through this R script.
The R script requires occurrence data.
Niche overlap analyses
Work through this R script.
The R script requires niche and environmental data. Please download the entire folder.
ENMeval
Work through this R script.
This R script replaces subsection 7 (user-defined) of the “Partitioning Occurences for Evaluation” of the ENMeval vignette. This modified script installs an older version of the package ‘blockCV’, which is still compatible with the ‘raster’ package.
Wallace
Play around with Wallace using the Shiny interface here.